In brief
Used to obtain compact TPMI PheWAS summaries, for one variant, by accepting an RsID, an RCMPh37 or RCMPh38 input, and resolving them to the required RCMPh38 request. As soon as the results of a concise TPMI are discussed, for a variant. Calls go through scripts/tpmi phewas.py. It is necessary to provide exactly one of the rsid, grch37, grch38 or variant fields, then resolve to the canonical request RCMPh38 chr:pos-ref-alt, before calling TPMI. We start at ten results, and we only increase if the first slice is not enough.
What it does
- Accepts a RsID, RCMPh37 or RCMPh38, and resolves to a request RCMPh38
- Treats only one variable at a time, and starts at about ten results
Who it is for, and an example
Researchers who want the PheWAS TPMI associations to vary from a rsID or contact information.
Example request: "For this rsID, give me a PheWAS TPMI summary, after resolution in RCMPh38. »
This skill is handed over to a PheWAS TPMI summary of one variant, accepting an RsID, RCMPh37 or RCMPh38, and resolving the required RCMPh38 request. Example written by iadujour.fr from the SKILL.md, not tested.
Install
In Codex: codex plugin add life-science-research@openai-curated (Official Place of Deposit).
codex plugin add life-science-research@openai-curatedWorks with
- Codex
Source: README: Codex plugin collection; the deposit marketplace is called "Official Codex". Other officers are not appointed.
Level: Intermediate
Suppose a project already in place at the publisher and the tools described in SKILL.md.
Good to know
SKILL.md excerpt
The original description, which the agent reads to decide whether to load the skill (in English):
Fetch compact TPMI PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise TPMI association results for one variant
Quoted from SKILL.md at commit fb0a183 . The folder also contains 3 extra files (agents/, scripts/).
The SKILL.md has 36 lines and 6 main sections:
- Operating rules
- Execution behavior
- Input
- Output
- Execution
- References
Licence: No licence found
Checked on 10 November 2026 : no licence file in the skill folder or at the repository root.
No licence found: short excerpt quoted only (quotation right). For the full text, see the source.
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